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  3. Enhanced Yellow Fluorescent Protein EYFP as a Protein Qubit
Quantum Computing

Enhanced Yellow Fluorescent Protein EYFP as a Protein Qubit

Posted on August 21, 2025 by Jettipalli Lavanya5 min read
Enhanced Yellow Fluorescent Protein EYFP as a Protein Qubit

Protein Qubit

Qubits in Proteins: A Revolution in Biology and Computing

Researchers from the University of Chicago have shown that enhanced yellow fluorescent protein (EYFP) can be used as a quantum bit (qubit). This discovery, which was reported in Nature, demonstrates that EYFP functions in both pure materials and, more importantly, within living bacterial and mammalian cells. This opens the door for genetically encoded quantum platforms in nanoscale biological sensing and quantum imaging.

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Harnessing Nature’s Own Qubits

Quantum technologies are based on qubits, which store superpositions of states in contrast to traditional bits. Although the majority of qubit platforms employ solid-state components such as diamond defects or superconducting circuits, this work presents the ground-breaking idea of employing proteins, which are frequently used as fluorescent markers in biology, as functional qubits.

The UChicago team discovered that EYFP possesses a transient energy-holding pattern known as the metastable “triplet state,” which enables them to access the electron’s magnetic spin and handle it like a qubit. They demonstrated how to initialize, control, and read out the protein qubit using microwaves and light. At cryogenic temperatures, laser pulses allowed for triggered readout with 20% spin contrast. Coherent manipulation was made possible by microwave fields, and spin coherence periods under dynamical decoupling were comparable to those of other molecular qubit systems, reaching about 16 microseconds.

“It wanted to explore the idea of using a biological system itself and developing it into a qubit, rather than taking a conventional quantum sensor and trying to camouflage it to enter a biological system,” stated David Awschalom, co-principal investigator of the project and Liew Family Professor of Molecular Engineering at UChicago PME. “The new direction here is harnessing nature to create powerful families of quantum sensors,” he continued.

Quantum Robustness in Living Systems

Importantly, the protein qubit disproved the notion that qubits cannot function in warm, noisy environments by functioning well inside living cells. The robustness of the qubit was demonstrated by the detection of optically induced magnetic resonance signals in E. coli at room temperature and human kidney cells at low temperature. The possibility of genetically encoding quantum sensors into living things, much to the way fluorescent proteins are employed for biological imaging, is increased by this discovery, which unites quantum information technology with life sciences.

Vast Potential for Biosensing and Beyond

There are significant ramifications for science and medicine if these findings are confirmed and expanded. Protein qubits may make it possible for:

Nanoscale sensing: Detecting minute magnetic fields, electric fields, or temperature changes at a previously unheard-of size is known as nanoscale sensing.

Medical diagnostics: Unmatched accuracy in tracking complex biochemical events, precisely probing protein conformations, or tracking how medications connect to targets.

Quantum material design: Providing a new platform for creating molecular-scale qubits that are intrinsically connected to biological processes.

Its findings enable new quantum sensing inside living systems and introduce a completely new approach to designing quantum materials, said Peter Maurer, co-principal investigator and assistant professor of molecular engineering at UChicago PME. He underlined, “In particular, it can now begin to overcome some of the obstacles faced by current spin-based quantum technology by utilizing nature’s own tools of evolution and self-assembly.”

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The Ingenious Experimental Approach

The team constructed a specialized confocal microscope to examine EYFP spin states in order to accomplish this. The protein was nudged to release stored energy in a controlled flash transmitting spin information using a “clever light trick” that included a feeble infrared laser. The protein’s spins were reversed by microwaves, producing patterns that supported quantum behavior. Genetic engineering was used to produce EYFP in cells, and the measured spin signals matched those of isolated proteins, confirming quantum behavior in the cellular setting. The children’ perseverance and curiosity were credited with creating this intricate system.

Current Limitations and Future Horizons

The platform nevertheless lags behind well-known solid-state sensors, such as the nitrogen-vacancy centers in diamond, despite this advancement. Coherence times and measured sensitivity (millitesla at ambient temperature, microtesla at cryogenic) are low. Stability is further limited by photobleaching of fluorescent proteins, which is still a significant problem. Enhancing coherence times, photostability, and spin readout efficiency is crucial.

Several avenues for progress have been discovered by the researchers:

Enhanced Coherence: Coherence times may be increased by replacing adjacent hydrogen atoms with deuterium.

Improved Readout: Signal collection could be greatly increased with the use of sophisticated optical readout systems.

Bioengineering for Performance: Optimizing quantum performance by modifying the spin and optical characteristics of fluorescent proteins through controlled evolution.

Protein qubits may allow for direct electron or nuclear magnetic resonance investigations inside cells, providing molecular-level insights into biological processes, provided sensitivities improve. They have the potential to produce new contrast “colors” for multiplexed quantum imaging as well.

A Blurring Boundary: Quantum Physics Meets Biology

This groundbreaking study demonstrates the growing convergence of molecular biology and quantum science. A new class of hybrid technologies that use quantum physics as a profound lens into the complex mechanisms of life could be introduced by genetically encodable qubits. The future of quantum biology requires interdisciplinary cooperation by nature. According to Peter Maurer, “only at a place like UChicago PME was an interdisciplinary approach possible for a project like this that is at the intersection of quantum engineering and molecular biology.” “It is entering an era where the boundary between quantum physics and biology begins to dissolve,” said co-first author Benjamin Soloway. The truly revolutionary science will take place there.

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Enhanced yellow fluorescent proteinEnhanced Yellow Fluorescent Protein EYFPEYFPquantum physicsQubit protein

Written by

Jettipalli Lavanya

Jettipalli Lavanya is a technology content writer and a researcher in quantum computing, associated with Govindhtech Solutions. Her work centers on advanced computing systems, quantum algorithms, cybersecurity technologies, and AI-driven innovation. She is passionate about delivering accurate, research-focused articles that help readers understand rapidly evolving scientific advancements.

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